miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Bos taurus



ABOUT THIS RECORD

ID: MNEST033151
species: Bos taurus
miRNA family: mir-26
source: miRBase, original name: bta-mir-26a-2 (MI0004731)

Taxonomy by NCBI:
Bos taurus Bos Bovinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTCAAGTAATCCAGGATAGGCT

miRNA*
CCTATTCTTGATTACTTGTTTC

mismatches: 3
bulges: 0

View larger
pre-miRNA
GGCTGTGGCTGGATTCAAGTAATCCAGGATAGGCTGTTTCCATCTGTGAGGCCTATTCTTGATTACTTGTTTCTGGAGGCAGCT

dot-bracket secondary structure
((((((..(..((..(((((((((.((((((((((..............)))))))))).)))))))))..))..)..))))))


SIMILARITIES
miRBase eca-mir-26a: 2e-42

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-26: 3e-35

Identical with: ssc-mir-26a from miRBase (MNEST033930)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned

references

[1] Long JE, Chen HX, Biochem Genet. 47:329-343(2009)., "Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning"
[2] Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP, Physiol Genomics. 29:35-43(2007)., "Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues"
[3] Gu Z, Eleswarapu S, Jiang H, FEBS Lett. 581:981-988(2007)., "Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland"




Liczniki na strone;